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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Home BLAST Prediction RegMap ATRM Download Help About Links |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010100033.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Moraceae; Morus
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Family | Trihelix | ||||||||
Protein Properties | Length: 345aa MW: 37298.5 Da PI: 5.5723 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 83.8 | 2.2e-26 | 49 | 145 | 1 | 85 |
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrt.sessstcpyfd 83 rWt+qe+l+Li+++r e+++rr + + +p+W++vs+++r +g++r+p+qC+++w+nl+++ykkike+e+ r+ ++s s +++ + XP_010100033.1 49 RWTRQEILVLIQGKRVAESKVRRIRtaggaafgsgqAVEPKWASVSSYCRMHGVNRGPVQCRKRWSNLAGDYKKIKEWESLRKnDPSDSFWAMRN 143 8*****************99998433344455555488*******************************************95255556677776 PP trihelix 84 ql 85 +l XP_010100033.1 144 DL 145 66 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.307 | 49 | 117 | IPR017877 | Myb-like domain |
Pfam | PF13837 | 1.6E-11 | 49 | 141 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 49 | 116 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 345 aa Download sequence Send to blast |
MALVQATSIP ASANTVDGET NGAVTVLPVP PSTDGAGGDD GSRAPRLPRW TRQEILVLIQ 60 GKRVAESKVR RIRTAGGAAF GSGQAVEPKW ASVSSYCRMH GVNRGPVQCR KRWSNLAGDY 120 KKIKEWESLR KNDPSDSFWA MRNDLRRERK LPGFFDKEVY DILDSGANQP VASGAEAETP 180 VPVPAAEEEE TGVMFDSGRG ATAEDGMFSD FEQEESGRSP EKEAQPPPAV AKEVARVPVG 240 IPATPISGAA AAESEKQPAT NPDTGATSQE GRKRKRSAFD ADEETSLQNQ LIDVLERNGK 300 AMAAHLEAQN THFQLDREQR KSHSDSLVAV INKLADALVR ISEKL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
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Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010100033.1 | 0.0 | hypothetical protein L484_013145 | ||||
Swissprot | Q8VZ20 | 1e-109 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | W9RBU9 | 0.0 | W9RBU9_9R | ||||
STRING | POPTR_0003s16150.1 | 1e-133 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-108 | Trihelix family protein |
Link Out ? help Back to Top | |
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Entrez Gene | 21396329 |